Welcome to velocyto.py!

Velocyto is a library for the analysis of RNA velocity.

Velocyto includes a command line tool and an analysis pipeline


CLI API has been improved and differs from previous versions. Please refer to the updated CLI tutorial and API session to know more about the changes.


velocyto-team is about to release velocyto.py v1.0 in the meanwhile API will be subject to minor changes until 1.0 release.


Please do not hesitate to report issues on our Github page. We try to respond within the few hours to all the users.


Indices and tables